PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G026700.1
Common NamePHAVU_001G026700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 221aa    MW: 23972.9 Da    PI: 8.6133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G026700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000227193123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ykC+ C+k+F++   L  H  +H
  Phvul.001G026700.1 71 YKCSVCHKTFPSYQALGGHKASH 93
                        9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.7E-147095IPR007087Zinc finger, C2H2
SuperFamilySSF576678.09E-770143No hitNo description
SMARTSM003550.00457193IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5567193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
PfamPF139121.4E-13120145IPR007087Zinc finger, C2H2
SMARTSM003550.19121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MALEALNSPT TTVPSFPFDH PTIPWAKRKR SKRSRDHPSE EEYLALCLIM LARGTTTTTT  60
PTPDPSSKLT YKCSVCHKTF PSYQALGGHK ASHRKLALAD DHPTSSAATS TSIATASGRA  120
HECSICHKSF PTGQALGGHK RCHYEGNNNN NNNNGNSTSV VTASEGVGST HSHHRDFDLN  180
IPAFPDLTTK PGEDEVESPH PVMKKPRLFV VPKIEIPHFL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1727761e-69FJ172776.1 Glycine soja putative Cys2-His2 type zinc finger protein gene, complete cds.
GenBankJQ7438891e-69JQ743889.1 Glycine max C2H2-type zinc finger protein (STF-3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160903.11e-163hypothetical protein PHAVU_001G026700g
SwissprotQ962892e-63ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLV7CRT31e-163V7CRT3_PHAVU; Uncharacterized protein
STRINGGLYMA17G35430.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-56salt tolerance zinc finger